Basic Science Award

Note:  Beginning with Fall 2016, The Basic Science program has been combined into the Mentored Scientist Award mechanism - which now has three scientific priority areas for funding: Basic Science, Clinical/ Translational/ Epidemiological/ Behavioral, and Implementation Science.

Below are the awards made under the Basic Science program from 1994 to 2016.

58 Awards

Award Recipient Award date Award Type
Transcriptome analysis of HIV latently infected cells Koh Fujinaga , PhD Spring Basic Science Award
The Role of LEDGF in establishing HIV latency in primary CD4 T cells Judd Hultquist, PhD Spring Basic Science Award
Rapid Genetic Interaction Mapping of HIV-1 Host Factors in Cultured T-Cells David Gordon, PhD Fall Basic Science Award
Quantifying the Role of Stochastic Gene Expression in HIV-1 Latency Establishment and Reactivation Anand Pai, PhD Spring Basic Science Award
Genetic Interaction Analysis of HIV-1 Rev Host Regulatory Networks Jason Wojcechowskyj, PhD Spring Basic Science Award
A Novel Dual Florescent HIV-1 to Study Latency Emily Battivelli, PhD Fall Basic Science Award
Exploring the Role of Caspase-1-Mediated-Pyroptosis in Promoting Chronic Inflammation in HIV Patients Gilad Doitsh, PhD Spring Basic Science Award
Mechanistic and Phenotypic Characterization of Semen Amyloid Disassembler as Novel Approach to HIV Microbicide Development Nadia Roan, PhD Spring Basic Science Award
Mucosal Natural Killer T (NKT) cells and the Gut Microbiome in HIV-1 Infection Devi SenGupta, MD Spring Basic Science Award
Intrapatient Coevolution Between the Antibody Repertoire and HIV Populations Ryan Hernandez, PhD Fall Basic Science Award
Investigating the interface between HIV-1 proteins and the host cellular ubiquitin machinery Ruth Huettenhain, PhD Fall Basic Science Award
Mechanisms Underlying CD4 T-Cell Depletion and Inflammation During Aids Progression Xin Geng, PhD Fall Basic Science Award
The Anti-HIV mechanism of human Piwil2 Pingyang Liu, PhD Fall Basic Science Award
Cytokine Responses in Elite Controllers of HIV Evan Jacobs, PhD Spring Basic Science Award
Identifying the Killing Pathway that Mediates CD4 T-cell Depletion in HIV-Infected Lymphoid Tissues Zhiyuan Yang, PhD Spring Basic Science Award
Structure-Function Study of Semen-Derived HIV Enhancing Amyloids and Their Interactors Haichuan Liu, PhD Spring Basic Science Award
Human Macrophage Heterogeneity in HIV-1 Infection Wes Yonemoto, PhD Spring Basic Science Award
Detection of HIV Transcription in Individual Cells by Flow Cytometry Elizabeth Sinclair, PhD Spring Basic Science Award
Hyperthermia and HSP90AB1 Facilitate HIV Infection Pheroze Joshi, PhD Fall Basic Science Award
Identification of Anti-HIV Factor(s) from CD8+ Cell Antiviral Factor Gene Candidates Lianxing Liu, PhD Fall Basic Science Award
Study of Tat Lysine 41 Post-translational Modification in HIV Transcription Gregory Camus, PhD Fall Basic Science Award
Understanding the Role of Inflamasome Activation in AIDS Progression Kathryn Monroe, PhD Fall Basic Science Award
HIV Transcription Inhibition by Newly Identified p300 Inhibitors Kotaro Shirakawa, MD, PhD Fall Basic Science Award
Role of Telomere maintenance in HIV-Associated Cardiovascular Disease Jue Lin, PhD Spring Basic Science Award
pDC Activation and Chronic Immune Activation in AIDS Richard Dunham, PhD Spring Basic Science Award
Do HIV Neutralizing Antibodies Recognize Inflammatory-mimetic Modifications of the HIV gp41 MPR? Vincent Venditto, PhD Spring Basic Science Award
SAHA Induced Mechanism of HIV Reactivation from Latency Koen Bartholomeeusen, PhD Fall Basic Science Award
HPV-associated Disruption of Anal Epithelium may Facilitate HIV Mucosal Transmission Sharof Tugizov, PhD Fall Basic Science Award
Investigation of the Effects of IL-2 on the Frequency of FcRL3+ Tregs and T cell Activation in HIV-infected Patients Louise Swainson, PhD Fall Basic Science Award
Differential Regulation of Basal and Tat-mediated HIV Transcription by Acetylation of P-TEFb Sungyoo Cho, PhD Fall Basic Science Award
Do Human Natural Killer Cells Acquire Immune Memory to Viral Infections? Lewis Lanier, PhD Spring Basic Science Award
The Role of P Bodies and Stress Granules in the HIV-1 Replicative Cycles Chunye Lu, PhD Fall Basic Science Award
Role of Double Modified Tat Protein in HIV-1 Transcription Sara Pagans, PhD Fall Basic Science Award
Activation of the SIRT1 Deacetylase as a Therapeutic Concept in HIV-induced T Cell Hyperactivation Xavier Contreras, PhD Spring Basic Science Award
Role of Chromatin Remodeling in HIV Transcriptional Regulation Shweta Hakre, PhD Spring Basic Science Award
The Role of Autophagy in HIV Infection Michael Killian, PhD, MPH Spring Basic Science Award
Activation of transcriptional elongation in HIV latently infected cells by SAHA Xavier Contreras, PhD Spring Basic Science Award
Defining the role of lysine methylation in HIV-1 Tat transactivation Melanie Ott, PhD Spring Basic Science Award
The role of transcriptional interference and inhibition of transcriptional elongation in HIV latency Valentina Lenasi, PhD Spring Basic Science Award
BRD4 Overexpression Increases the Propensity for Proviral Latency and Determine how this Relates to HIV Latency in vivo. Dwayne Bisgrove, PhD Spring Basic Science Award
High CD8+ T cell Activation Associates with HIV Disease Outcome Jason Barbour, PhD, MHS Spring Basic Science Award
Genetic Diversity of HIV-1 in vivo During Very Early Primary Infection Eric Delwart, PhD Spring Basic Science Award
Optimization of Cytokine Flow Cytometry (CFC) for Trans-Shipped Specimens Mike McCune, MD, PhD Fall Basic Science Award
Development and Validation of a Cytokine Flow Cytometry Assay to Detect T Cell Immune Responses Against Pneumocystis Carinii Laurence Huang, MD Fall Basic Science Award
Evaluation of Thymic Mass in HIV-1 Infected Patients Mike McCune, MD, PhD Fall Basic Science Award
Expanded Cellular Tropism of Human Immunodeficiency Virus 1 by a Trans-Receptor Mechanism Roberto Speck, MD Spring Basic Science Award
Identification of Novel HIV Co-Receptors and Characterization of Their Role in Viral Transmission Laura Digilio, MD Spring Basic Science Award
The Biology of Coreceptors for HIV and Chemokine Receptors in vivo as a Factor in Regulating HIV Disease Progression Mark Goldsmith, MD, PhD Fall Basic Science Award
Characterization of the Epstein Barr Virus BMRF-2 Gene and its Role in the Pathogenesis of Hairy Leukoplakia Laurel Lagenaur, PhD Spring Basic Science Award
Characterization and Inhibition of Kaposi's Sarcoma Herpesvirus Protease Charles Craik Spring Basic Science Award
Transgenic Rabbits and HIV Infection Mark Goldsmith, MD, PhD Spring Basic Science Award
Molecular Interactions Between HIV and HPV Joel Palefsky, MD Spring Basic Science Award
Biochemical and Clinical Consequences of Antiviral Resistance Mutations in HIV-1 Protease Charles Craik Spring Basic Science Award
Pilot Study of HIV-1-Specific Immunity Following Antiretroviral Treatment Interruption Mike McCune, MD, PhD Spring Basic Science Award
The Kinetics of Primary Viremia in Macaques and Sooty Mangabeys Infected with Simian Immunodeficiency Virus Mark Feinberg, MD, PhD Spring Basic Science Award
Molecular Biology of HIV Macrophage Infection Kathleen Page, PhD Spring Basic Science Award
Lymphocyte Apoptosis and Disease Progression Following HIV Infection Teri Liegler, PhD Fall Basic Science Award
Direct Measurement of Rate of Synthesis and Removal of Circulating HIV in Infected Humans Marc Hellerstein, MD, PhD Fall Basic Science Award
Contacts
  • Role of Telomere maintenance in HIV-Associated Cardiovascular Disease

    Role of Telomere maintenance in HIV-Associated Cardiovascular Disease

    Abstract

    HIV-infected individuals are at increased risk for a number of diseases typically associated with aging, including cardiovascular disease. It is now well accepted that poorly defined HIV-associated immunologic perturbations, in addition to traditional risk factors and antiretroviral therapy toxicity, contribute to this risk. This study will explore the pathogenesis of HIV-associated cardiovascular disease with a focus on telomere maintenance and aging.

  • HIV Transcription Inhibition by Newly Identified p300 Inhibitors

    HIV Transcription Inhibition by Newly Identified p300 Inhibitors

    Abstract

    Understanding the mechanism of HIV-1 transcription is key for developing a new class of antiviral drugs. HIV-1 Tat is an essential protein that transactivates HIV transcription by binding to the TAR region of HIV mRNA. p300-mediated acetylation of Tat is required for transactivation of the HIV long terminal repeat. Full activation of the HIV promoter also requires nuclear factor kappa-B (NF!B), which activates HIV transcription. Full activation of NF_B also requires p300-mediated acetylation.

  • Understanding the Role of Inflamasome Activation in AIDS Progression

    Understanding the Role of Inflamasome Activation in AIDS Progression

    Headshot of

    Abstract

    Progressive depletion of CD4 T cells is a hallmark of HIV/SIV-induced AIDS. While HIV/SIV directly infects and kills CD4 T cells, the number of productively infected cells in vivo cannot account for the massive CD4 T-cell losses that occur. To gain a better understanding of this phenomenon, primary human lymphoid aggregate cultures (HLAC) from human tonsil and spleen tissue were examined. Three surprising discoveries emerged.

  • Study of Tat Lysine 41 Post-translational Modification in HIV Transcription

    Study of Tat Lysine 41 Post-translational Modification in HIV Transcription

    Abstract

    One of the remaining questions in HIV research is how the virus establishes a dormant (latent) state and thereby escapes eradication by current antiretroviral therapy. Latently infected T cells do not produce significant amounts of viral genomes or proteins due to the silencing of a specific step in the virus life cycle?viral transcription. Viral transcription can be reactivated in latently infected cells, a process that rekindles HIV infection after antiretroviral therapy is discontinued and remains a major barrier to eradication.

  • Identification of Anti-HIV Factor(s) from CD8+ Cell Antiviral Factor Gene Candidates

    Identification of Anti-HIV Factor(s) from CD8+ Cell Antiviral Factor Gene Candidates

    Abstract

    CD8+ T cells play an important role in inhibiting HIV replication through a non-cytotoxic antiviral activity. This response is mediated by a soluble CD8+ T cell anti-HIV factor (CAF). Several studies have shown that all known anti-HIV factors lack identity with CAF. CAF appears to be a novel anti-HIV protein. A great effort has been given to evaluating the gene candidates associated with CAF identified by DNA microarray procedures. The list of potential genes was narrowed down to twenty-five.

  • Hyperthermia and HSP90AB1 Facilitate HIV Infection

    Hyperthermia and HSP90AB1 Facilitate HIV Infection

    Abstract

    We have previously shown that infection-impaired HIV with incompletely processed capsid-spacer protein 1 (CA-SP1) is rescued by either cellular activation or increased expression of HSP90AB1, a member of the cytosolic heat shock protein 90 family of cellular chaperones. Expanding on our initial results, we found that HSP90AB1 is present in HIV virions and that recombinant HSP90AB1, but not nonfunctional mutated HSP90AB1E42A+D88A, restores infectivity to HIV with mutations in CA that alter core stability and impair infectivity.

  • Human Macrophage Heterogeneity in HIV-1 Infection

    Human Macrophage Heterogeneity in HIV-1 Infection

    Headshot of

    Abstract

    Although macrophages are important in vivo targets for Human Immunodeficiency Virus Type 1 (HIV-1) infection, their relevance for the transmission, spread, and pathogenesis of HIV-1 remains unclear. This may be due to heterogeneity in subpopulations of macrophages, such that some but not all are permissive for infection. In part, this tropism could be related to tissue localization, but cell-intrinsic restriction factors, such as APOBEC3 and SAMHD1, have also recently been shown to exhibit direct antiviral activity.

  • Identifying the Killing Pathway that Mediates CD4 T-cell Depletion in HIV-Infected Lymphoid Tissues

    Identifying the Killing Pathway that Mediates CD4 T-cell Depletion in HIV-Infected Lymphoid Tissues

    Headshot of

    Abstract

    Progressive depletion of CD4 T cells is a hallmark of untreated acquired immune deficiency syndrome (AIDS), but the mechanism of CD4 T-cell death by HIV remains poorly understood. While HIV directly infects and kills CD4 T cells, the number of productively infected cells in vivo cannot account for the massive CD4 T-cell losses that occur. To better understand how HIV infection depletes CD4 T cells, we used primary human lymphoid aggregate cultures (HLAC) from human tonsil and spleen tissue. Using this system three surprising discoveries emerged.

  • Detection of HIV Transcription in Individual Cells by Flow Cytometry

    Detection of HIV Transcription in Individual Cells by Flow Cytometry

    Abstract

    Detection of gene expression by flow cytometry is currently limited to transcripts that are abundantly expressed, however the recently reported RNAscope technology offers greatly improved sensitivity and specificity and has the potential to change the approach to single-cell transcript measurements that currently require low sensitivity approaches and are extremely low throughput. As yet these probes have not been utilized for study of patient samples by flow cytometry.

  • Structure-Function Study of Semen-Derived HIV Enhancing Amyloids and Their Interactors

    Structure-Function Study of Semen-Derived HIV Enhancing Amyloids and Their Interactors

    Headshot of

    Abstract

    Sexual transmission accounts for most cases of HIV infection worldwide, with semen being the main carrier of viral particles during this process. Recent studies revealed that positively charged amyloid fibrils from human semen can substantially boost HIV infectivity rates. In two separate studies, M?nch et al. and our group identified two distinct HIV-enhancing semen amyloids.