Single cell sequencing approaches have revolutionized the ability to define gene transcription (scRNA-seq), cell surface proteins (scAb-seq), and “chromatin state” (scATAC-seq) from individual immune cells. The UCSF Single Cell Sequencing Interest Group, co-founded by Drs. Sulggi Lee and Nadia Roan, is an effort to bring together researchers across campus from various disciplines to share novel single cell strategies for the application to clinical translational research.
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Alaa Abdellatif - UCSF CFAR Bioinformatics Core
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with Noorsher Ahmed (Gene Yeo's lab at UCSD)
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With Laura Jimenez Garcia (CNAG)
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Lessons from Spatial. Also, do we really need Everything Everywhere at Once?
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Single-cell RNA sequencing platforms
Single-cell RNA sequencing platforms
Arjun Rustagi, MD, PhD
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The T-Cell Receptor Immune Repertoire: Computational Approaches for Network Analysis & Epitope Prediction
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SSIG meeting 2/22/2024
Single cell sequencing approaches have revolutionized the ability to define gene transcription (scRNA-seq), cell surface proteins (scAb-seq), and “chromatin state” (scATAC-seq) from individual immune cells. The UCSF Single Cell Sequencing Interest Group, co-founded by Drs. Sulggi Lee and Nadia Roan, is an effort to bring together researchers across campus from various disciplines to share novel single cell strategies for the application to clinical translational research.
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Beyond Single-Cells: Using Spatial Transcriptomics for Subcellular Biology
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single cell MAS-Seq multiplexing options
In-person and on Zoom.
Meeting ID: 966 8696 3338
Password: 942194
Phone or Conference room password: 942194
Zoom link: https://ucsf.zoom.us/j/96686963338?pwd=MHJNRmFNU0RRdFlGeFcwWm9KWGd2dz09
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FixNCut: Single-cell genomics through reversible tissue fixation and dissociation
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UCSF Single-Cell Sequencing Interest Group (SSIG)