Single cell sequencing approaches have revolutionized the ability to define gene transcription (scRNA-seq), cell surface proteins (scAb-seq), and “chromatin state” (scATAC-seq) from individual immune cells. The UCSF Single Cell Sequencing Interest Group, co-founded by Drs. Sulggi Lee and Nadia Roan, is an effort to bring together researchers across campus from various disciplines to share novel single cell strategies for the application to clinical translational research.
Alaa Abdellatif - UCSF CFAR Bioinformatics Core
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with Noorsher Ahmed (Gene Yeo's lab at UCSD)
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With Laura Jimenez Garcia (CNAG)
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April SSIG Meeting: The power to integrate spatial location, transcriptome, and epigenome of single cells
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Single cell transcriptomic analysis of lymphoid tissues of methamphetamine exposure in people with HIV
Single cell transcriptomic analysis of lymphoid tissues of methamphetamine exposure in people with HIV
Felipe Ten Caten, PhD
Associate Scientist Pathology Advanced and Translational Research Unit (PATRU) -
Analysis in progress: Using single-cell genomic and TCR sequencing to define functional γδ T cell subsets in children with high vs. low malaria exposure.
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Lessons from Spatial. Also, do we really need Everything Everywhere at Once?
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Single-cell RNA sequencing platforms
Single-cell RNA sequencing platforms
Arjun Rustagi, MD, PhD
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The T-Cell Receptor Immune Repertoire: Computational Approaches for Network Analysis & Epitope Prediction
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SSIG meeting 2/22/2024
Single cell sequencing approaches have revolutionized the ability to define gene transcription (scRNA-seq), cell surface proteins (scAb-seq), and “chromatin state” (scATAC-seq) from individual immune cells. The UCSF Single Cell Sequencing Interest Group, co-founded by Drs. Sulggi Lee and Nadia Roan, is an effort to bring together researchers across campus from various disciplines to share novel single cell strategies for the application to clinical translational research.
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Beyond Single-Cells: Using Spatial Transcriptomics for Subcellular Biology
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single cell MAS-Seq multiplexing options
In-person and on Zoom.
Meeting ID: 966 8696 3338
Password: 942194
Phone or Conference room password: 942194
Zoom link: https://ucsf.zoom.us/j/96686963338?pwd=MHJNRmFNU0RRdFlGeFcwWm9KWGd2dz09